Protein Info for BPHYT_RS32720 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 64 to 87 (24 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 137 to 154 (18 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details PF09490: CbtA" amino acids 4 to 230 (227 residues), 251.1 bits, see alignment E=7.2e-79

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6611)

Predicted SEED Role

"Predicted cobalt transporter CbtA" in subsystem Coenzyme B12 biosynthesis or Transport of Nickel and Cobalt

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T907 at UniProt or InterPro

Protein Sequence (246 amino acids)

>BPHYT_RS32720 membrane protein (Burkholderia phytofirmans PsJN)
MVGKLLVRGMLAGIAAGLLTFGFARVVAEPQVNQAISFEEKADAAKGEAPEPEIVSRDTQ
RGIGLLTGVLTYGAAFGGLFSLVFAYAYGRVGALSPRALSAWLALGAFIALAVVPNLKYP
ANPPSVGDPETIGTRTGLFFLMIAISLAAMVFSLKVRRRAAMKLGAWNGSIVGAAVFIVI
IAAVQLSMPTINEVPEAFPAVLLWKFRVAALGMQAIMWATIGLLFGALVERSVLTRVGGR
AAVKSA