Protein Info for BPHYT_RS32665 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 174 to 191 (18 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details amino acids 290 to 313 (24 residues), see Phobius details amino acids 322 to 339 (18 residues), see Phobius details amino acids 345 to 369 (25 residues), see Phobius details amino acids 387 to 430 (44 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 393 (366 residues), 136.6 bits, see alignment E=1e-43 amino acids 314 to 433 (120 residues), 39.9 bits, see alignment E=2.7e-14 PF00083: Sugar_tr" amino acids 59 to 444 (386 residues), 138.3 bits, see alignment E=3.6e-44

Best Hits

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 100% identity to bpy:Bphyt_6599)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBC5 at UniProt or InterPro

Protein Sequence (459 amino acids)

>BPHYT_RS32665 MFS transporter (Burkholderia phytofirmans PsJN)
MATVNSGARLDRLPISRFHWNILGLIGAGAFLDAFDIYLANGALAAMVKSGFTDLRLGSF
FISATFMGMMIGAGLSGYLGDRFGRRYSYQANLAIFGLASIAACFAPNIYWLILLRFIMG
VGLGAELVVAAGTLCEFVPPATRGRWTSLLALIINSGLLGATAIGYWVIPHLGWRYMFAI
AGIGALVVWFLRHRMPESPRWLETVGRLDEAEATVSAIERQVEARVGKLPPVARVMSHEV
PAAPFSALFARGMIGRTLVAALTCMAINMSLYGFVAWLPTFFVKEGLTIVQSLGFVLLMS
FGAPAGAVVGYLVTDRIGRRNGIVLFSLVTIALGFVYVQMRAPAAISIVGFALVTAIYTV
CTLGLFGYIPELFPTAHRLRGTGVAGTCGRAASMSTPYVALLLYTHFGVTGVLTMVGGVL
LLLSVAILALRIETSQQTLEDISPDADLTPSGELFEKSV