Protein Info for BPHYT_RS30935 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 52 to 74 (23 residues), see Phobius details amino acids 88 to 114 (27 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 276 to 299 (24 residues), see Phobius details amino acids 312 to 330 (19 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 371 to 393 (23 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 378 (354 residues), 204.2 bits, see alignment E=1.4e-64 amino acids 310 to 433 (124 residues), 38 bits, see alignment E=4.7e-14

Best Hits

Swiss-Prot: 41% identical to LGOT_ECOLI: Probable L-galactonate transporter (lgoT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6242)

MetaCyc: 41% identical to galactonate:H+ symporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-227

Predicted SEED Role

"D-galactonate transporter" in subsystem D-galactonate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TAX3 at UniProt or InterPro

Protein Sequence (439 amino acids)

>BPHYT_RS30935 MFS transporter (Burkholderia phytofirmans PsJN)
MSATPSLEQAPPRIRRAQIVALTLLMVSGIVNYLDRGTLAVANPLIRHDLGLSLGEMGLL
LSAFSWSYALFQLPVGGLVDRIGPRKLLGIGLIVWSLAQASGGFVSTFGWFILARIVLGI
GEAPQFPSAARVVSNWFPLRARGKPTGIFNSASPLGTALAPLCLSVLVVQFHWRWAFIVT
GVVGLVVALVWLAVYRDPVKATMTEAERHYLEGDDADRKPAPTVTFAEWRSLFSHGTTWG
MLIGFFGSVYLNWVYLTWLPGYLTMERHMSLMHTGVAASIPFFCGFLGSLTAGWFSDLIT
SRSTSPVASRRNAVVIAMLGMVAFTIPAALVESNTIAIVCISVVIFLANAASASSWALAT
AAAPPNRVGSLGAIQNFGGFLGGALAPILTGYIAQSWSFVPALLTAAGIAFIGAMSYLLL
VRKPIEDPSTPTEPVRAPA