Protein Info for BPHYT_RS30490 in Burkholderia phytofirmans PsJN

Annotation: 2-haloalkanoic acid dehalogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 PF00702: Hydrolase" amino acids 7 to 155 (149 residues), 50.1 bits, see alignment E=2.3e-17 TIGR01493: HAD hydrolase, family IA, variant 2" amino acids 8 to 184 (177 residues), 60.7 bits, see alignment E=1e-20

Best Hits

KEGG orthology group: K07025, putative hydrolase of the HAD superfamily (inferred from 100% identity to bpy:Bphyt_6150)

Predicted SEED Role

"2-haloalkanoic acid dehalogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T8B5 at UniProt or InterPro

Protein Sequence (237 amino acids)

>BPHYT_RS30490 2-haloalkanoic acid dehalogenase (Burkholderia phytofirmans PsJN)
MKLTDFKVLTFDVVGTLIDFERGVLASVRRIGGAKAKDLTDDQIFEPYMRGRAAYPGRSS
HEMANVYLSLAKELGLPDDAQSAAAFQRDVLEWPAFADSVAALKRLRKHFRLVAMTNADR
VALSAYAHTLGDPFDDTVCCDETGVAKPDPQFFAYNRGRQAAFGYKFGEILHTAQSQYHD
IGIATKLGYATCWIERRQNVKGFGATPVPEAVTTPTFKFATLGALADAVEAEARLAA