Protein Info for BPHYT_RS30190 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 103 to 127 (25 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 180 to 201 (22 residues), see Phobius details amino acids 243 to 265 (23 residues), see Phobius details amino acids 285 to 307 (23 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 7 to 105 (99 residues), 48.6 bits, see alignment E=8.8e-17 PF00528: BPD_transp_1" amino acids 118 to 317 (200 residues), 123.7 bits, see alignment E=7.4e-40

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to bpy:Bphyt_6089)

Predicted SEED Role

"Peptide ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TAS1 at UniProt or InterPro

Protein Sequence (317 amino acids)

>BPHYT_RS30190 ABC transporter permease (Burkholderia phytofirmans PsJN)
MKAHAQRLIAARLGLALLTLLLVSAVVFAVTGLLPGDAAQQALGQAATPEAVAALRHQFG
LDQPALQRYLVWLLHVVSGNFGISLSNNLPVSQLIATRLPNSLVLAGLTAVVSVPVALLI
GISSAMFRGSLLDRTLNVLTLSTVAVPEFLIATIAVLIFAVKLRWLPALSYLSEVHSFGA
LLRIYAMPVMTLCCVLVAQMARMTRAAVLDQLNSSYVEMALLKGASPVRVVWRHVLPNTI
GPIANAVALSLSYLFGGVVIVESIFNYPGLASLMVDAVTNRDMPLVQGCVMVFCAAYLVL
VLIADLCQIVSNPRLRR