Protein Info for BPHYT_RS30170 in Burkholderia phytofirmans PsJN

Annotation: (2Fe-2S)-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 4 to 318 (315 residues), 92.5 bits, see alignment E=8.4e-30 PF00890: FAD_binding_2" amino acids 5 to 41 (37 residues), 25.2 bits, see alignment 2.4e-09 PF13450: NAD_binding_8" amino acids 7 to 50 (44 residues), 28.9 bits, see alignment 2.8e-10 PF04324: Fer2_BFD" amino acids 372 to 424 (53 residues), 35.8 bits, see alignment 2.1e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6085)

Predicted SEED Role

"Opine oxidase subunit A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TAR7 at UniProt or InterPro

Protein Sequence (468 amino acids)

>BPHYT_RS30170 (2Fe-2S)-binding protein (Burkholderia phytofirmans PsJN)
MAPRVVVIGAGPAGVRAAQALAEAGLRPVVIDEGRRDGGQIYRRQPEGFSRSYETLYGTE
AERATSLHQSFDALKSRIDYLPETLVWNISPNAVHLVSGTRYRSLAFDALIVCSGATDRL
MPVKGWHQAGTYSLGGAQVALKSQGCAIGSRIVMMGSGPLLYLVAAQYVKAGAQVAAVLD
TSTFMQRVAALPRLLAIPAALRKGIALTRVLAHARVPVHRGVEPLEIKGSAQDGVSAVEV
ALPGGKRLEFKCDAVALGYHLRPETQLADLAGCRFVFDENAQQWLPQIDADGRSSIKGVY
LAGDGARVRGADAAERSGRLAALAALEDHGIAVDGVEHLRAELARFSRFAQGLRGAFPWP
AKFAASLPDETIVCRCEAITAGELRRVVQATGAKEANRAKAFSRVGMGRCQGRYCGHAGA
EIIAAAACVPLSSVGRLRGQAPVKPLPVALTEVASEVVSEAVSAEVSK