Protein Info for BPHYT_RS29790 in Burkholderia phytofirmans PsJN

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 41 to 65 (25 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 146 to 171 (26 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details PF01810: LysE" amino acids 17 to 206 (190 residues), 106.2 bits, see alignment E=8.1e-35

Best Hits

Swiss-Prot: 32% identical to LEUE_SHIDS: Leucine efflux protein (leuE) from Shigella dysenteriae serotype 1 (strain Sd197)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_6008)

Predicted SEED Role

"Putative threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T872 at UniProt or InterPro

Protein Sequence (208 amino acids)

>BPHYT_RS29790 lysine transporter LysE (Burkholderia phytofirmans PsJN)
MLDLSTLGTFVAVVLGLFLIPGPAVLLVLTRTVHGGRKAGILTGLGIAVGDFIHTLGASV
GLSALLMTSALAFNAVKFVGAAYLVYLGVRALREKQAGAHMPAVAPVSASKAFFQAIPAE
VLNPKTALFFLAFLPQFVRPEHGSTFLQFTTLGLIFVGMSALYTTLIVLTIRPLGKFVKR
LTWLTRWQNKIIGVLFISLGLRVATQTR