Protein Info for BPHYT_RS27185 in Burkholderia phytofirmans PsJN

Annotation: D-ribose transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 PF00005: ABC_tran" amino acids 39 to 188 (150 residues), 107.5 bits, see alignment E=8.8e-35 amino acids 290 to 442 (153 residues), 75.1 bits, see alignment E=9.3e-25

Best Hits

Swiss-Prot: 89% identical to RGMG1_BURCM: Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 (Bamb_1228) from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 100% identity to bpy:Bphyt_5471)

MetaCyc: 47% identical to ribose ABC transporter ATP binding subunit (Escherichia coli K-12 substr. MG1655)
ABC-28-RXN

Predicted SEED Role

"Possible fucose ABC transporter, ATP-binding component"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TGQ8 at UniProt or InterPro

Protein Sequence (516 amino acids)

>BPHYT_RS27185 D-ribose transporter ATP-binding protein (Burkholderia phytofirmans PsJN)
MTNATQRGPGPAAEPEPPVSREILQLKGVSKRFPGVVALDGIDLDLCAGEVHAVCGENGA
GKSTLMKIISGQYRADEGVVRYRGAPVQFSSTSDAQAAGIAIIHQELNLVPHLSVAENIY
LAREPKRGPFVDYRTLNSNAQRCLQRIGLNVSPSTLVGALSLAQQQMVEIAKALSLDARV
LIMDEPTSSLTESETVQLFRIIRELRAGGVAILYISHRLDEMAEIVDRVTVLRDGRHIAT
SDFASTTVNEIVARMVGRPLDDAYPPRQSTPSNQILLRVRDLQRTGVFGPLSFELRKGEI
LGFAGLMGAGRTETARAIFGAERPDSGSITLGDEPVTIGSPREAIRHGIAYLSEDRKKDG
LALSMPVSANITLANVRAISSRGFLRFSEETAIAERYVRELGIRTPTVKQIARNLSGGNQ
QKIVISKWLYRGSRILFFDEPTRGIDVGAKYAIYGLMDRLAADGVGVVLISSELPELLGM
TDRIAVFHEGRITAVLETRQTSQEEILHHASGRSHA