Protein Info for BPHYT_RS26955 in Burkholderia phytofirmans PsJN

Annotation: succinylglutamate desuccinylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF04952: AstE_AspA" amino acids 49 to 331 (283 residues), 176 bits, see alignment E=5.5e-56

Best Hits

KEGG orthology group: K06987, (no description) (inferred from 100% identity to bpy:Bphyt_5425)

Predicted SEED Role

"succinate dehydrogenase subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBY5 at UniProt or InterPro

Protein Sequence (337 amino acids)

>BPHYT_RS26955 succinylglutamate desuccinylase (Burkholderia phytofirmans PsJN)
MPSTQSLISTDIDYERPGLQNGTLRVPYSHDRSAYGHIPIPITVLKGGDGPTVLLTGGNH
GDEYEGPVALMKLIRRLPSMSIKGRLIVVPALNFPAFINGSRTSPIDRGNLNRVFPGARN
GHITEMIAHYADTELFPRADVVIDLHAGGASFNHLPTVLAAPPADISRSAEYRRLVQAFA
APQTMLMDLLGEDRTYGAAVERHGKLFLCGEFGGYAACDPDGVAIVEDGLRRVLHTLGVT
PDDRPPAPRHDTRWLKVEGARHYVFASRAGVAEPVFGLGDQVKKDQLAARVFDPYAPWSE
PQEIRFAGDGVVVCMRSFARVEPGDCIAVLAADAQWQ