Protein Info for BPHYT_RS26830 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 109 to 132 (24 residues), see Phobius details PF07291: MauE" amino acids 11 to 89 (79 residues), 27.4 bits, see alignment E=5.7e-10 PF07681: DoxX" amino acids 14 to 95 (82 residues), 79.4 bits, see alignment E=3.8e-26 PF02077: SURF4" amino acids 54 to 136 (83 residues), 42 bits, see alignment E=1.4e-14

Best Hits

Swiss-Prot: 54% identical to YPHA_SHIFL: Inner membrane protein YphA (yphA) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5400)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBV6 at UniProt or InterPro

Protein Sequence (137 amino acids)

>BPHYT_RS26830 membrane protein (Burkholderia phytofirmans PsJN)
MRYTLFENQKDAVILVARVLLMVLFVMFGWSKLTGFSGTVAYMTSSGAPVPELSAVIAVV
MEFVVGIALLVGFFTRPLALLLAVYTLGTAFIGHHYWNMTGAVQYDNMIHFYKNISIIGG
LLLLCVTGAGKYSIDRR