Protein Info for BPHYT_RS25085 in Burkholderia phytofirmans PsJN

Annotation: sugar-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 820 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF20148: DUF6531" amino acids 94 to 173 (80 residues), 37.9 bits, see alignment E=1.8e-13 PF05593: RHS_repeat" amino acids 259 to 295 (37 residues), 27.5 bits, see alignment (E = 3.3e-10) amino acids 280 to 318 (39 residues), 25.2 bits, see alignment 1.7e-09 amino acids 389 to 426 (38 residues), 30.2 bits, see alignment 4.8e-11 TIGR01643: YD repeat (two copies)" amino acids 280 to 303 (24 residues), 19.9 bits, see alignment (E = 4.2e-08) amino acids 389 to 421 (33 residues), 23.2 bits, see alignment (E = 3.6e-09)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_5044)

Predicted SEED Role

"YD repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCI4 at UniProt or InterPro

Protein Sequence (820 amino acids)

>BPHYT_RS25085 sugar-binding protein (Burkholderia phytofirmans PsJN)
MIRNGINESSAGMAARLLAAFILLMVAFGANAADCNAVWAATGAKPGSPTCRWDAYAGVP
GGIQYYNCVSLPLIDAWCATPADDQPEASCPVADPVYPGSGAVTLTEADFVSGDEIPMLF
ARTYRSKPLTASATAMGPVWFHSWQRNLGLANANNGSTSTVLAYRQSGEPITFVWSAGTW
RTKAFTGLALAQNDSGWTLTDLSTETVESYSGQGVLLAERTKTGFVRTLSYDGSGLLTTV
TQHAEGTDTNKDVTLRLDYDDKRRLSRLNDPLGGLTQYGYDANGNLVSVTWPDGNVRRYV
YDDTRFRNALTGEIDESGNRMATWSYDAQGRAVEVSHPNAGQNVQLAYNAGSTIITASKG
STTLSLSSIGGMLRPTGSASTAGNTNSGWDASGNLLKDTDASGGTSEYSYDDTGRPVRAT
VKSAGGTSITTIRYYEASGLRPSMIASPRLIQSFVYDANGNVTGISETPTTDATGASAFD
AAKADGVTTAYGMTYDANNRLAFVMQLADGKSAAQWKVNRDLTGNVFAIIALGDIPQATE
FISRDAAHRVQYGYNPTGDFYLRYDRRGRIDNFKFNEYASPANGGIRRVFKARFGYSPDG
RVVSRTGTVANDGSVLDLNDGTDIPISGDETNQWIDNYNYGDSPVGPPANLQGARRLLGD
NFLGTSTVCSGCHFSAGLIDGTVRGIAMVYRLLQNPVVRYGIGQGARKAAENWDRIKQMC
KPAAETEVDGIPPGRITSEYTDITTGNSMRNIRTDVGKAEFEANLAESGYAQTLSKDGKA
DIFTKGESQYTVREYSNSGAMTADVKVSGVNIAKIRLGGK