Protein Info for BPHYT_RS24895 in Burkholderia phytofirmans PsJN

Annotation: multidrug ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 857 transmembrane" amino acids 34 to 53 (20 residues), see Phobius details amino acids 267 to 290 (24 residues), see Phobius details amino acids 314 to 342 (29 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details amino acids 438 to 463 (26 residues), see Phobius details amino acids 494 to 516 (23 residues), see Phobius details amino acids 726 to 751 (26 residues), see Phobius details amino acids 772 to 803 (32 residues), see Phobius details amino acids 816 to 840 (25 residues), see Phobius details PF02687: FtsX" amino acids 268 to 390 (123 residues), 63.5 bits, see alignment E=1.9e-21 amino acids 732 to 844 (113 residues), 55 bits, see alignment E=8e-19 PF12704: MacB_PCD" amino acids 494 to 697 (204 residues), 40.7 bits, see alignment E=3.4e-14

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to bpy:Bphyt_5006)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TCE6 at UniProt or InterPro

Protein Sequence (857 amino acids)

>BPHYT_RS24895 multidrug ABC transporter substrate-binding protein (Burkholderia phytofirmans PsJN)
MTSADSRHLPRLRGHRALARWLLGAEWRSHRGRALVAIATIALGVALGYAVQLINSAAFN
EFSAAARSLSGEADLQVRGAQPLVDEAIYPLLANAPGVALASPVLALDVTVPDRSAALPV
LGIDVFKAGRIAPDLIGVPSPDKPFDSLATDTVFLSTAAQQWLKVKAGDEVALRSGTSIV
HLRVAGGIVRTRPGQRLAVMDIAAAQWKFGKLGKLSRVDVQLERGVDRERFRRELQARLG
NQWVIAETRDAESRTDRLSRAYRINMNVLALVALFTGAFLVFSTQALSVVRRRAQFAMLR
VLGLTRGQLLRQILVEGALLGLLGSLAGLALGYAMASSALHFFGSDLGGGYFPGVQPRVG
FEPLASALFLMLGLAVSVLGSLAPALEAARARPATALKAGAEEGALARLATPWPALLCLL
AAAALTQLPPLFDAPIGGYLAVALLLVGGIALMPRVTALIFGAASRAFATRRRTGAAGTL
ALARLANAPGHASIAMGGVLSSFALIVAMAIMVASFRVSVEDWLVHLLSADLYVRVAPNG
DTGGLRLDEQSRLAAVPGIKTAAFARTSHLTLDPARPDIALLAREIDAADPGANLQITGA
VLPPAELHAGETPVWVSEAMVDLYQYKLGQRVRLPFGERGHVFVVAGVWRDYVRQTGAIQ
IRLADFRRLTGDTSATDVAVTVQPGTSVDQVVEGLRALPFGASLDLSLPGEIRARTLVIF
DRSFAVTYLLEAVAIVIGLFGVAATFSAQTLARSREFGMLRHVGVTRSQVLAILALEGGM
LTACGIALGFVLGSAISLILVFVVNPQSFHWSMSLHVPWIALATVAVVMLASSCSTAVIA
GRDAVSVDAVRAVKEDW