Protein Info for BPHYT_RS23975 in Burkholderia phytofirmans PsJN

Annotation: peroxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details TIGR01412: Tat-translocated enzyme" amino acids 4 to 433 (430 residues), 457.4 bits, see alignment E=6.6e-141 TIGR01409: Tat (twin-arginine translocation) pathway signal sequence" amino acids 10 to 33 (24 residues), 19.1 bits, see alignment (E = 1.9e-07) TIGR01413: Dyp-type peroxidase family" amino acids 61 to 422 (362 residues), 296.3 bits, see alignment E=4.4e-92 PF04261: Dyp_perox_N" amino acids 61 to 220 (160 residues), 117.6 bits, see alignment E=4.9e-38 PF20628: Dyp_perox_C" amino acids 228 to 421 (194 residues), 156.8 bits, see alignment E=4.4e-50

Best Hits

KEGG orthology group: K07223, putative iron-dependent peroxidase (inferred from 100% identity to bpy:Bphyt_4829)

Predicted SEED Role

"Ferrous iron transport peroxidase EfeB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TBJ1 at UniProt or InterPro

Protein Sequence (434 amino acids)

>BPHYT_RS23975 peroxidase (Burkholderia phytofirmans PsJN)
MANDQPPRPSRRGFLKAGGAAVAAGASLGASLATSQNALGKTQPHAADPQLAVEPFYGVH
QGGIVTPQQSHTYVAALDLTTEKREDVIALLRAWTEAAARLTQGGTAAPLPTGDADQNKA
APDSGDVLGLGPNGLTITFGFGPGLFTHEGKDRYGLAARRPAALVDLPRFNGDQLIKEKT
GGDLYIQACANDAQVAFHAVRQLSRMAYGTAAMRWGQAGFLSGPRGQTPRNLMGFKDGTN
NPSTARPPLMNQFVWAGASADAPWMEGGTYTVVRRIRITLEHWDNTELDFQEQVFGRHKY
SGAPIGKKNEFDAVDLKEEDKDGNPVIPENSHVRLSNQASNNGAQILRRSYSYNDGTNFY
IERWPPWRQETEYDAGLIFIAHQSDPRTGFIPINDRLAKFDMMNQFTTHVGSAIFAVPPG
AKPGSYIGAGLFET