Protein Info for BPHYT_RS22500 in Burkholderia phytofirmans PsJN

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 PF00126: HTH_1" amino acids 4 to 62 (59 residues), 65.3 bits, see alignment E=3.9e-22 PF03466: LysR_substrate" amino acids 89 to 293 (205 residues), 134.9 bits, see alignment E=2.7e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4532)

Predicted SEED Role

"Probable transcription regulator protein of MDR efflux pump cluster" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TGU4 at UniProt or InterPro

Protein Sequence (334 amino acids)

>BPHYT_RS22500 transcriptional regulator (Burkholderia phytofirmans PsJN)
MDRLQAMQVFTRVVDTNSFTRAAETLDLPRASVTTIIQNLEAFLGTRLMHRTTRRLSLTP
DGAAYYERCVRILADVEETEASFQSGNKKPHGKLRIDMPGSIGRLLVIPSLCEFHTRYPD
IDLQLGLTDRPVDLLQEGVDCVVRVGALQDSSLVARRIGLFEGVTCAAPDYIERAGMPTS
LEDLENHKAVNYFSSRTGRTLDWAFLVDGKEIEVKMKSIVSVNDADAYVTCGLEGFGLIQ
PALFMVLPHLRSGQLVEVLPELKPLPMPISAVYPHSRHLSPKVRVFVDWIAELFDRCPLL
SGRGSLDATCTKRTFEERESAPMLDTPVITEWVA