Protein Info for BPHYT_RS21835 in Burkholderia phytofirmans PsJN

Annotation: NADH:flavin oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF00724: Oxidored_FMN" amino acids 4 to 342 (339 residues), 217.3 bits, see alignment E=1.9e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4395)

Predicted SEED Role

"xenobiotic reductase A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TFA0 at UniProt or InterPro

Protein Sequence (365 amino acids)

>BPHYT_RS21835 NADH:flavin oxidoreductase (Burkholderia phytofirmans PsJN)
MSALFQPYKLKDVSLRNRIAIPPMCQYTAEDGLINDWHRIHLAGLARGGAGLVIVEATAV
SPEGRITPGCAGIWTDEQAQAFAPVVASIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA
DDDSRSWQTIAPSAIAFGGGLPKVPKAMTLDDIARVREDFVAAAKRALDAGFEWLELHFA
HGYLGQSFFSTHSNQRDDAYGGSLENRSRFLLETLAAVRKVWPEHLPLTARFGVIEYDGR
DEETLVESIELAKNFKREGLDMLSVSVGFSTPTAAIPWAPAFLAPIAERVRREAGIPVSS
AWGIDTPELADRSVKDGQLDLVMVGRAHLADPHWPYHAAKKLGIERPSWTLPAPYAHWLE
RYKVA