Protein Info for BPHYT_RS20725 in Burkholderia phytofirmans PsJN

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 146 to 165 (20 residues), see Phobius details PF00512: HisKA" amino acids 219 to 281 (63 residues), 48.5 bits, see alignment E=1.1e-16 PF02518: HATPase_c" amino acids 333 to 439 (107 residues), 89.5 bits, see alignment E=3.1e-29 PF14501: HATPase_c_5" amino acids 333 to 425 (93 residues), 23.1 bits, see alignment E=8.6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_4166)

Predicted SEED Role

"Sensory histidine kinase QseC" in subsystem Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2TEM8 at UniProt or InterPro

Protein Sequence (445 amino acids)

>BPHYT_RS20725 histidine kinase (Burkholderia phytofirmans PsJN)
MLKSLRNQLVIALGAVVSLFAILQGVSSYQFCVAGMSAVLDLRMEQVASRLRVGFGEGIP
TVPARGSQDARDIFIVMWKDGETQPVRTTEPSLLLPRNAVEGFSSPIVNGEGWRIYTARD
GAQTVQVAQRLSVRHEIEETAATKTLWPIVVLIPLVWAAVIFVVSRSLRELNRLGNKVRD
IDVNHLQALPLARVPTELLPFIRSINLMIERLARSIESERKFISDAAHELRTPLTALQLQ
ADNLQRDVMPSNQERFRALQGGIARSSNLISQLLRLARADAPPVGQSMTRAMISVDVSAA
VVNAISDVLPIAMQRGIDIGADEMVSAKVRAIELDIGTVIKNLVSNAVRYTPDGGTIDLS
TRVHDGMVSVEVKDTGSGIDETLLPRVFDRFFRANTDIEGSGLGLSIVKAIVTRYGGTVT
LRNRDDGQSGIVATVSLPIEPDGAG