Protein Info for BPHYT_RS19580 in Burkholderia phytofirmans PsJN

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 PF00216: Bac_DNA_binding" amino acids 1 to 90 (90 residues), 116.1 bits, see alignment E=6.7e-38 PF18291: HU-HIG" amino acids 2 to 91 (90 residues), 34.5 bits, see alignment E=1.9e-12

Best Hits

Swiss-Prot: 97% identical to DBHA_BURP2: DNA-binding protein HU-alpha (hupA) from Burkholderia pseudomallei (strain 1026b)

KEGG orthology group: K03530, DNA-binding protein HU-beta (inferred from 97% identity to bma:BMA2913)

Predicted SEED Role

"DNA-binding protein HU" in subsystem DNA structural proteins, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7N9 at UniProt or InterPro

Protein Sequence (92 amino acids)

>BPHYT_RS19580 DNA-binding protein (Burkholderia phytofirmans PsJN)
MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGDAVQLIGFGSFGSGKRAARTG
RNPKTGETIKIPAAKTVKFTAGKAFKDAVNKR