Protein Info for BPHYT_RS19090 in Burkholderia phytofirmans PsJN

Annotation: flagellar hook protein FliD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF02465: FliD_N" amino acids 32 to 128 (97 residues), 66 bits, see alignment E=4e-22 PF07195: FliD_C" amino acids 254 to 482 (229 residues), 172.3 bits, see alignment E=1.2e-54

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 100% identity to bpy:Bphyt_3833)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T7E0 at UniProt or InterPro

Protein Sequence (505 amino acids)

>BPHYT_RS19090 flagellar hook protein FliD (Burkholderia phytofirmans PsJN)
MSSISTSSSTASANSALQSAAQSIISGSTGNSSMDVSTLVTALVNAKVAGQTSALAAQQT
SDNTTLSAYGALSSALSALQSGITNLANGNTLATFAATASGTGLTATAGVGAVAGSYSIA
VTQIASSQALSSAAFGATTQLGTGTLSISMNGKSMDINVDNTNNTLSGIASAINASSSNP
GVTATIVTGTDGAHLVLRAANTGAANVINVSTSNITSDTGLSSLGVTSTASTTGGQSSIT
SANSGSAWTQSGFAQDAEYTIGGIAGSSASNAVTGAISGVTINLTAAAVGTPAGTPQTLT
IAQDTTAQNTAINNFVSLYNTVITTMSTLTSFSSGATSQGPLLGDSTLQTIKNTLANIVG
GAVGSGSTGTTLAAIGITLKDDPADGTMVVDNNALNTALTSSPATVASLFNSTNGIAEQL
NASITTFTQTGGIIDTRNTALNADLKSIATQQTALADYTTQLTNQYQAQFTALNTLMATM
NNNSQYLTALFGGTNSAGALATNKS