Protein Info for BPHYT_RS18865 in Burkholderia phytofirmans PsJN

Annotation: flagellar L-ring protein FlgH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF02107: FlgH" amino acids 53 to 231 (179 residues), 197.2 bits, see alignment E=8.4e-63

Best Hits

Swiss-Prot: 82% identical to FLGH_BURMA: Flagellar L-ring protein (flgH) from Burkholderia mallei (strain ATCC 23344)

KEGG orthology group: K02393, flagellar L-ring protein precursor FlgH (inferred from 100% identity to bpy:Bphyt_3788)

Predicted SEED Role

"Flagellar L-ring protein FlgH" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T795 at UniProt or InterPro

Protein Sequence (232 amino acids)

>BPHYT_RS18865 flagellar L-ring protein FlgH (Burkholderia phytofirmans PsJN)
MSHFSRNPVHSRTAQALVQLTLLAALGGCGLVPKQPITQQPMTALPPMPPSAQSPGSIYN
PGYAGRPLFEDQRPRNVGDILTIVIQENVNATKSSGAGVNRSGNTNFDVPTAGFLGGLFG
KVNLSANGANKFAATGGANASNTFSGVITVTVTGVLPNGNLMVSGEKQMLINQGNEFVRF
SGVVNPNTISNLNAVYSTQVADAKIEYSAKGYIDESENMGFLQRFFLNVSPW