Protein Info for BPHYT_RS18315 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 22 to 48 (27 residues), see Phobius details amino acids 61 to 79 (19 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 227 to 248 (22 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 294 to 311 (18 residues), see Phobius details amino acids 317 to 340 (24 residues), see Phobius details amino acids 354 to 375 (22 residues), see Phobius details amino acids 381 to 401 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 22 to 196 (175 residues), 63.7 bits, see alignment E=2.4e-21 amino acids 234 to 407 (174 residues), 31.9 bits, see alignment E=1.1e-11 PF07690: MFS_1" amino acids 28 to 281 (254 residues), 123.9 bits, see alignment E=1.1e-39 amino acids 233 to 405 (173 residues), 65.4 bits, see alignment E=6.6e-22 PF06779: MFS_4" amino acids 42 to 389 (348 residues), 35.3 bits, see alignment E=1.4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_3675)

Predicted SEED Role

"Major facilitator superfamily (MFS) transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T6P3 at UniProt or InterPro

Protein Sequence (410 amino acids)

>BPHYT_RS18315 MFS transporter (Burkholderia phytofirmans PsJN)
MNVAPSAADSRASVRNGYAGRALIASVLGYAMDGFDLLILGFMLPVIAADLHLSSTQAGS
LVTWTLIGAVAGGLIFGVLSDYFGRVRMLTWTILIFAVFTGLCALAQGYADLLVYRTIAG
IGLGGEFGIGMTLVAEAWPAAQRARVSSYVGLGWQLGVLAAALLTPLLLPVIGWRGMFAL
GLLPAVVSFFVRRRVEEPALFTERMARGMRKLPLKLLVADGRTTRASIGVAILCSVQNFG
YYGLMIWLPSYLSKTFGYSLTKSGLWTSATILGMACGIWLFGIAADRFGRKPTFLFYQAG
AVVMVFVYAHLSTPMALLIGGAAMGVFVNGMIGGYGALISELYPTDARATAQNVLFNAGR
AVGGFGPVVVGALAARYSFGAALALLASIYLLDIFATLFLIPERRGAELE