Protein Info for BPHYT_RS18260 in Burkholderia phytofirmans PsJN

Annotation: phenylacetic acid degradation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF05138: PaaA_PaaC" amino acids 5 to 267 (263 residues), 312.4 bits, see alignment E=1.1e-97 TIGR02158: phenylacetate-CoA oxygenase, PaaI subunit" amino acids 14 to 267 (254 residues), 280.7 bits, see alignment E=5.9e-88

Best Hits

KEGG orthology group: K02611, phenylacetic acid degradation protein (inferred from 100% identity to bpy:Bphyt_3664)

Predicted SEED Role

"Phenylacetate-CoA oxygenase, PaaI subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T6N2 at UniProt or InterPro

Protein Sequence (267 amino acids)

>BPHYT_RS18260 phenylacetic acid degradation protein (Burkholderia phytofirmans PsJN)
MTITPQHLQYVLRLADTALILGQRNTEWCGHGPILEEDIALSNMSLDLIGQARLLYTHAA
SLEQQLTGKNRTEDDYAYFRAEREFANYTLAELPHVGPLSATAKAEKDYAVTIVRNFLYS
TLMAHLWTALTASTDEQLAAIASKSIKETSYHVHHAREWLIRFGDGTEESHRRAQTALDY
LVPYSREFFSTDAVEESIAAAGIGPLTSDLETAWLDDVRATLDEATLTLPEPVKHVTTGK
HGEHSEHMGFVLAEMQSLARQHPGATW