Protein Info for BPHYT_RS17145 in Burkholderia phytofirmans PsJN

Annotation: type II secretion system protein E

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 PF00437: T2SSE" amino acids 54 to 320 (267 residues), 319.8 bits, see alignment E=6.3e-100

Best Hits

KEGG orthology group: K02652, type IV pilus assembly protein PilB (inferred from 100% identity to bpy:Bphyt_3452)

Predicted SEED Role

"Type IV fimbrial assembly, ATPase PilB" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SYV7 at UniProt or InterPro

Protein Sequence (431 amino acids)

>BPHYT_RS17145 type II secretion system protein E (Burkholderia phytofirmans PsJN)
MQASFQPAAASPRPIASAHESAVRAKLKPFAPDLSAANPADTDNAPAVRLLTDTLQEATR
RNASDLHIEPAEHGWRVRLRIDGVLHEIPPPPAHLRDAFITRVKVLARMDIAERRVPQDG
RLRISTSPGRVEDYRVNSLPTLFGEKLVLRRLDALPADLSLDSLGLDPRQRQTVDAAIRA
PHGLMLVTGPTGSGKTLSLYCFLNLLNGEARNLCSVEDPAEIQLAGINQVSVREKAGLTF
AVALRAFLRQDPDVIMVGEIRDEETADVAVKAAQTGHLVLSTLHTNDAPAAVARLIDIGV
EPYNLAAALRMVTAQRLVRRLCAACRVPAPQSLAALRAAGFSEHQLDGWQPYAAAGCAAC
HGIGYRGRVGVHQVMPVSDAMRELIVASAGTHELARLAQTEQVGTLRDAALTRVRDGTTS
LAEALAATEVA