Protein Info for BPHYT_RS16065 in Burkholderia phytofirmans PsJN

Annotation: LacI family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF00532: Peripla_BP_1" amino acids 42 to 248 (207 residues), 56.2 bits, see alignment E=4e-19 PF13407: Peripla_BP_4" amino acids 43 to 289 (247 residues), 194.2 bits, see alignment E=3.2e-61

Best Hits

KEGG orthology group: K10439, ribose transport system substrate-binding protein (inferred from 100% identity to bpy:Bphyt_3236)

Predicted SEED Role

"Xylose ABC transporter, periplasmic xylose-binding protein XylF" in subsystem Xylose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SY92 at UniProt or InterPro

Protein Sequence (317 amino acids)

>BPHYT_RS16065 LacI family transcriptional regulator (Burkholderia phytofirmans PsJN)
MTQSLSKPTSLKTFARSTAALATLAFGLSFIAAPAAQAAPLKIGMTFQELNNPYFVTMQK
ALNDAAASIGATVVVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKKA
GVVVVAVDANANGPVDSFVGSKNYDAGEMACEYLAKSIGGSGEVAILDGIPVVPILERVR
GCKAALAKAPGVKLVDTQNGKQERATALSVTENMIQAHPNLKGVFSVNDGGSMGALSAIE
SSGKDIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQVRIALGIALAKKWGANVPKTI
PVDVKMIDKSNAKGFSW