Protein Info for BPHYT_RS15765 in Burkholderia phytofirmans PsJN

Annotation: peptide ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 transmembrane" amino acids 39 to 57 (19 residues), see Phobius details PF00496: SBP_bac_5" amino acids 116 to 435 (320 residues), 271.3 bits, see alignment E=7.2e-85

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 100% identity to bpy:Bphyt_3175)

Predicted SEED Role

"ABC-type dipeptide transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T6K3 at UniProt or InterPro

Protein Sequence (554 amino acids)

>BPHYT_RS15765 peptide ABC transporter substrate-binding protein (Burkholderia phytofirmans PsJN)
MKTPADRFLALDAARLTADAYGNHAIDEFRAGRITRRDLLRYASVIGLSLVGGGVLNAPR
ARAQGTAGASNQTIRVAHLTPAGAVDPLTVTDAASLALLNQTGEFLIDDDGEKLVLKPAL
ALSWKPNDKGDVWTFKLRPNVKFHDGQPFTAKDVAATFDRLADPASGSAALSVLKGVLSK
GGAKVVDDHTVAFHLDAPNGNFPYYVSSDNYNAVILPANYAGGYEKSFIGTGPFKLEKYQ
AKVGASFVRNPDYWGDKALPQRVQFSFYADEQAQLLALQGHQADVMGTFTVQGGAGILNN
PDYKAVGVKSSAHRQIHMRNDSPLFKDKRVRQALALSLDRDVLVRGLFKGRAQLGNDSPF
APVFPSSDAGVPQRKIDVAKAKQLLAQAGVPNGFDVTLTTEKYMEIPDLAVVVQNAAKAI
GVRINLKVESQSLYYGAGTPGKSDWLDSPLGITDYGHRGVPNVFLNAPLTSTGTWNAAHF
KNPQYDQLVEQFVAAIDLGSQKKISGQIQTLLLDETPIIIPFFYDQLIAMRKGVNGVRFT
ALAQLYFDRAVLSA