Protein Info for BPHYT_RS15505 in Burkholderia phytofirmans PsJN

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF12697: Abhydrolase_6" amino acids 106 to 319 (214 residues), 83.7 bits, see alignment E=6e-27 PF12695: Abhydrolase_5" amino acids 106 to 193 (88 residues), 35 bits, see alignment E=2.5e-12 PF12146: Hydrolase_4" amino acids 142 to 299 (158 residues), 29.8 bits, see alignment E=7.6e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_3124)

Predicted SEED Role

"Probable signal peptide protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T6F2 at UniProt or InterPro

Protein Sequence (332 amino acids)

>BPHYT_RS15505 alpha/beta hydrolase (Burkholderia phytofirmans PsJN)
MSPKRLLCAAAVCLCFTGAAALAQTNAPSATPAPAPAMAPGVAPAAEPADEPGTEASAPE
APTPAPMAPMAPMAPSMTPAAPPAKAATVPPPTPPAAPMTGPVRNVVLVHGAFVDGSSWN
GVVAKLQQKGYHVSSVQNPLTSLADDVAATRRVLARQNGPTILVGHSWGGVVITEAGANA
PNVAGLVYVAAIAPDLHESTMDLMKRAAPAPAGAGIMKDSSGFLWLDRTKYHADFAADVP
ENLTRVLATAQVPIAATAFSETVSQVAWKEKPSWYVLTTRDRAVSPEVEKFMADRMGAKI
VPMASSHLAPVSHAGAIADVIDRAARELSRQQ