Protein Info for BPHYT_RS14780 in Burkholderia phytofirmans PsJN

Annotation: radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 PF04055: Radical_SAM" amino acids 86 to 263 (178 residues), 58 bits, see alignment E=7e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2980)

Predicted SEED Role

"Radical SAM domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T610 at UniProt or InterPro

Protein Sequence (381 amino acids)

>BPHYT_RS14780 radical SAM protein (Burkholderia phytofirmans PsJN)
MTDSDSHFVNEFPIAPPAPRKGRGAVTNLQGRYEVDQREAVDDGWLSAPEEGDEPKVLRT
QVFEERAKTILTRNASPDIPFSVSLNPYRGCEHGCIYCFARPTHAYLGLSPGLDFESRIY
AKINAPELLERELSKKSYVPEPIALGVNTDAWQPVERDLRLTRRVIEVLSERQHPFAAIT
KSSLIERDLDLLAPMAARGQFMAAITITTLDAEIARTLEPRAATPSRRLRAIRTLSEAGI
PVGVSIAPVIPFVTEPDMERVLEACAEAGASNASYIVLRLPWEVAPLFKDWLAAHFPDRA
DRVMSRVRDMRGGKDYDSSFSTRMKGEGLWADLLKQRFHKAVRRLGLNRRDRGILDMSHF
RPVDVPRADKPARDDPQLNLF