Protein Info for BPHYT_RS14485 in Burkholderia phytofirmans PsJN

Annotation: ribonuclease E

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1097 TIGR00757: ribonuclease, Rne/Rng family" amino acids 13 to 425 (413 residues), 527.6 bits, see alignment E=1.1e-162 PF00575: S1" amino acids 36 to 116 (81 residues), 34.8 bits, see alignment 2.6e-12 PF10150: RNase_E_G" amino acids 120 to 391 (272 residues), 331.2 bits, see alignment E=7.7e-103 PF20833: RNase_E_G_Thio" amino acids 403 to 487 (85 residues), 115.7 bits, see alignment 1.2e-37

Best Hits

Predicted SEED Role

"Ribonuclease E (EC 3.1.26.12)" in subsystem RNA processing and degradation, bacterial or Ribosome biogenesis bacterial (EC 3.1.26.12)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 3.1.26.12

Use Curated BLAST to search for 3.1.26.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5V2 at UniProt or InterPro

Protein Sequence (1097 amino acids)

>BPHYT_RS14485 ribonuclease E (Burkholderia phytofirmans PsJN)
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVRPVAAPAPVAVTPASGGFIGWLKNLFGVQPAAPAPVAPAATDKQARPQRGERT
ERGERTGERGGDRNRNRRTGTGTRDAAGRGEGTTGGRQAQGQQPSQRREEREPREGRETR
EGREPREAREAREPRGNREPREAREGREPREAREPREGRENRDRDNRGAERAETAEAAPR
GERQERGERRERGERAERGERRKPQTETADALTQSEAQTAEELVQNQTALGENGAPIDQE
AVAREGEERRRRRRGRRGGRREREEDVNGNLAADVAEAEGDNASATDEAPVRTAHQPVER
KPEVVEAKDVTPVEVVVAAVATQTAVVTELHAATETPALAVEKAAKTETVVPVAEAPVAP
AVVEPVAETPVAQAAAEPVEAAQAAPAASETVSLVEPVARVEAPAHAHVEAPAVAPVVEA
QAAAPAPAPVETAAPAVAIEAPVAQPARQAEIVEPQPVVAAVAPAPEPAAVEPAPLAVAP
QAAPQAPRQAAVSAEALKPVLEQAGLVWVNTDADKLRAAQEVAAQTVKPARVARERKPLP
PLDSAPMQQVETGQHPQ