Protein Info for BPHYT_RS14205 in Burkholderia phytofirmans PsJN

Annotation: lytic transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 564 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF01464: SLT" amino acids 118 to 220 (103 residues), 87.1 bits, see alignment E=6.7e-29 PF01476: LysM" amino acids 341 to 384 (44 residues), 23.2 bits, see alignment 5.2e-09 amino acids 418 to 458 (41 residues), 26.9 bits, see alignment 3.7e-10

Best Hits

KEGG orthology group: K08307, membrane-bound lytic murein transglycosylase D [EC: 3.2.1.-] (inferred from 100% identity to bpy:Bphyt_2870)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZS6 at UniProt or InterPro

Protein Sequence (564 amino acids)

>BPHYT_RS14205 lytic transglycosylase (Burkholderia phytofirmans PsJN)
MRFIFSALLVLTLAACASQGPTTSIPNTATNPASQQAVADALRKSATAKETINVDQGSVT
QLTSADADLWGRIRRGFQMPDLQTDLVDMQVNWYAQRPDYVQRMTERSQKYLYHIVEELE
ARHMPTELALLPFIESAYSPQALSVAKAAGMWQFMPGTGRTYNLKQNMWQDERRDVLAST
SAALDYLSRLHDMFGDWQLALAAYNWGEGNVQRAIARNEAAGLPTDYLSLRMPNETRNYV
PKLQAVKNIVMNPQMYGLTLPTIPNHPYFVTVTTSHDIDVDMAAKLSNLSADEFRALNPS
FRKPVILGATQPQILLPFDNASAFERNLKTYSGSLSSWTTYTVTERATPAAIAQKISVDA
DTLMEVNKIPVGMRLKPGSTIVVPRGSDDDEDISADVAESAVLAMEPDVPDTRKMLIRVR
RNQSMAAIAVRYGVSVGQLKAWNRTHRDAVSRGQVIVLHVPVGKAMPSEPGPERIATDVQ
GGGVEKIGTRVADTRRESRYDKKKGRGRAEVVKVSEPVGKVVKPTASSASKGKVTKVSAS
TSSKASKAAAESRPKTAASAKKGK