Protein Info for BPHYT_RS12960 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 78 to 108 (31 residues), see Phobius details amino acids 129 to 154 (26 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details amino acids 223 to 253 (31 residues), see Phobius details PF07264: EI24" amino acids 8 to 218 (211 residues), 102.6 bits, see alignment E=1.6e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2618)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5R1 at UniProt or InterPro

Protein Sequence (277 amino acids)

>BPHYT_RS12960 membrane protein (Burkholderia phytofirmans PsJN)
MNDLLRSFGRALASALHPRMLWLTFMPFLAATVGWGVILWFSWQTLIGATRSWLEGWSFT
ITLYHLFDWLGFSALHAAIAPFIVIAMAIPLIVVTVLLLIATLSMPAVIRFLSARQFPSL
EMRRGGTWYGSLGQALWTTLVCLVLLIVTLPLWLVPPFFALIPPLLWGWLTYRVMSYDAL
ALHATRDERRALVRRFRLPLLLIGIASGLLGSLPTLLWASSVWLIVLFPVVTAVTIWIYA
FILIFSALWFGYYCLRALQRMRADEHGGVRHAAPVPY