Protein Info for BPHYT_RS12850 in Burkholderia phytofirmans PsJN

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 PF00072: Response_reg" amino acids 11 to 124 (114 residues), 102.3 bits, see alignment E=1.8e-33 PF00196: GerE" amino acids 151 to 205 (55 residues), 68.4 bits, see alignment E=3.3e-23

Best Hits

Swiss-Prot: 43% identical to FIXJ_BRADU: Transcriptional regulatory protein FixJ (fixJ) from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)

KEGG orthology group: None (inferred from 98% identity to bph:Bphy_1472)

Predicted SEED Role

"Nitrogen regulation protein NR(I)" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5N6 at UniProt or InterPro

Protein Sequence (214 amino acids)

>BPHYT_RS12850 LuxR family transcriptional regulator (Burkholderia phytofirmans PsJN)
MNSPVTTQETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFIDAWQPHQHPGQIACL
ILDVRMSGMSGLELQERLIADNASLPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAEL
RKLVERMLDKARSESTSVQQQRAAAERLGKLTAREHQVLERIIAGRLNKQIADDLGISIK
TVEAHRANIMEKLNVNTVADLLRLALSNKPQPAQ