Protein Info for BPHYT_RS12600 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 52 to 76 (25 residues), see Phobius details amino acids 84 to 109 (26 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 148 to 165 (18 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 202 to 227 (26 residues), see Phobius details PF01027: Bax1-I" amino acids 21 to 224 (204 residues), 164.4 bits, see alignment E=1.6e-52

Best Hits

KEGG orthology group: K06890, (no description) (inferred from 100% identity to bxe:Bxe_A1590)

Predicted SEED Role

"Putative TEGT family carrier/transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXT4 at UniProt or InterPro

Protein Sequence (232 amino acids)

>BPHYT_RS12600 membrane protein (Burkholderia phytofirmans PsJN)
MNDHPYSFGRNGAVSTVETRNRVLRNTYWLLALSMIPTVLGAWVGLTTGFSLFAATSPAM
SMLAFFAIAFGFMFAIQKTKDSAAGVFVLLGFTFFMGLMLSRILSFVLGFSNGPSLIMLA
FGGTGVIFASMATIATVSKRDFSGLGKWLFMGVIVLLLASVANVFLHLPALMLTVSVMAI
VIFSAYMLFDVQRVVNGGETNYITATLAIYLDLYNVFVNLLALLGIFGGNRN