Protein Info for BPHYT_RS12490 in Burkholderia phytofirmans PsJN

Annotation: cupin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 PF08007: JmjC_2" amino acids 134 to 247 (114 residues), 130.6 bits, see alignment E=3.9e-42 PF02311: AraC_binding" amino acids 205 to 254 (50 residues), 21.9 bits, see alignment 1.9e-08 PF20514: ROXA-like_wH" amino acids 299 to 410 (112 residues), 51.1 bits, see alignment E=1.9e-17

Best Hits

KEGG orthology group: None (inferred from 89% identity to bgf:BC1003_1223)

Predicted SEED Role

"FIG002776: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXR2 at UniProt or InterPro

Protein Sequence (416 amino acids)

>BPHYT_RS12490 cupin (Burkholderia phytofirmans PsJN)
MPKRPTDHPADAASARNSSPASKPAVPVLPPSPDTPTPLLGNLTPSQFMRRYWQKKPLLI
RQAIPNVEAPLSRDEFFELADQDEVEARLITHFRNKWQLEHGPFAPDELPSVKQRAWTLL
VQGVDLHDDRARALLDRFRFVPDARLDDLMISYASDGGGVGPHFDSYDVFLLQVKGKRRW
RISAQKDLTLQPGLPLKVLQNFQPEEEWLLEPGDMLYLPPHIAHDGIAEGECMTCSIGFR
APSASELTGQFLYHLAERGDAADRPGALYRDPQQPAVERPAELPAALVERVGAILARIKW
NEQDIASFLGTYLSEPKPSVVFDPPQRPLNEARFISQASKSGIRLDRKTNLLYNRRFFFV
NGEETSFDGAKKWLFDLANHRCMSAKRFVTLSHDSSVTARLHEWYCAGWIQVGELA