Protein Info for BPHYT_RS12135 in Burkholderia phytofirmans PsJN

Annotation: elongation factor Ts

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details TIGR00116: translation elongation factor Ts" amino acids 1 to 287 (287 residues), 316.7 bits, see alignment E=6.8e-99 PF00889: EF_TS" amino acids 72 to 270 (199 residues), 244.9 bits, see alignment E=3.1e-77

Best Hits

Swiss-Prot: 100% identical to EFTS_PARPJ: Elongation factor Ts (tsf) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K02357, elongation factor Ts (inferred from 100% identity to bpy:Bphyt_2454)

Predicted SEED Role

"Translation elongation factor Ts"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5J3 at UniProt or InterPro

Protein Sequence (293 amino acids)

>BPHYT_RS12135 elongation factor Ts (Burkholderia phytofirmans PsJN)
MAAITASMVAELRAKTDAPMMECKKALTEADGDMARAEELLRVKLGNKASKAASRVTAEG
VVASFIGGNAGSLVELNCETDFVSKNDDFLGFSKKVAELVATQNPADVAALAALPLDGST
VDAVRLALVGKIGENLSIRRFVRFETSNKLAAYLHGTRIGVLVEYTGADEQVGKDVAMHI
AAMKPVSLSSDDVPADLIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQT
FVKNDKQTIEQMLKAGNSSVQKFALFVVGEGIEKKQDDFAAEVAAQVAAAKQQ