Protein Info for BPHYT_RS12125 in Burkholderia phytofirmans PsJN

Annotation: ribosome-recycling factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 TIGR00496: ribosome recycling factor" amino acids 11 to 186 (176 residues), 227 bits, see alignment E=5.9e-72 PF01765: RRF" amino acids 21 to 184 (164 residues), 228.4 bits, see alignment E=2.1e-72

Best Hits

Swiss-Prot: 100% identical to RRF_PARPJ: Ribosome-recycling factor (frr) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K02838, ribosome recycling factor (inferred from 98% identity to bgf:BC1003_1291)

Predicted SEED Role

"Ribosome recycling factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5J1 at UniProt or InterPro

Protein Sequence (186 amino acids)

>BPHYT_RS12125 ribosome-recycling factor (Burkholderia phytofirmans PsJN)
MSVADIRKGAEQKMQRSIDAFKNDLSKIRTGRAHTGLLDHIQCDYYGSPVPISQVANLTL
IDARTIGVQPWEKKMVQVVEKAIRESDLGLNPATQGDVIRVPMPALTEERRRELTKVVKS
EAETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRAGDDVQKLTDKFVAEIDKLVVTKE
AEIMTV