Protein Info for BPHYT_RS11895 in Burkholderia phytofirmans PsJN

Annotation: peroxiredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 TIGR03561: peroxiredoxin, Ohr subfamily" amino acids 25 to 160 (136 residues), 123.6 bits, see alignment E=3.4e-40 PF02566: OsmC" amino acids 65 to 158 (94 residues), 56 bits, see alignment E=2.3e-19

Best Hits

Swiss-Prot: 42% identical to OHRB_BACSU: Organic hydroperoxide resistance protein OhrB (ohrB) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_2403)

Predicted SEED Role

"Organic hydroperoxide resistance protein" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T5D8 at UniProt or InterPro

Protein Sequence (166 amino acids)

>BPHYT_RS11895 peroxiredoxin (Burkholderia phytofirmans PsJN)
MDNNKLQPPPLSLLDRYRGQDFESLYTTTVTVSGGETGHGRASGVARSDDGNLVLDLRLP
SELGGPGTGTNPEQLFAAGFAACFHGALNLLGSRAAMEISNTVVEVQVSFGRDPVDGGYA
LAIDIRVRMPGVERHRVEELVRNAERLCPYAKMARQGTVNIVTVVD