Protein Info for BPHYT_RS11215 in Burkholderia phytofirmans PsJN

Annotation: ribose ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 PF00005: ABC_tran" amino acids 27 to 181 (155 residues), 110.2 bits, see alignment E=1.3e-35 amino acids 281 to 440 (160 residues), 65.7 bits, see alignment E=7.2e-22

Best Hits

Swiss-Prot: 44% identical to RBSA_GEOKA: Ribose import ATP-binding protein RbsA (rbsA) from Geobacillus kaustophilus (strain HTA426)

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 100% identity to bpy:Bphyt_2262)

Predicted SEED Role

"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T500 at UniProt or InterPro

Protein Sequence (532 amino acids)

>BPHYT_RS11215 ribose ABC transporter ATPase (Burkholderia phytofirmans PsJN)
MDSTDHDAVPAVLSVSGIGKTYAEPVLADISLSLRAGEVLALTGENGAGKSTLSKIIGGL
VEPTAGTMQLGGVPYAPASRTQAEALGVRMVMQELNLLPTLSVAENLFLNRLPRAGAFSF
GWIDRRKLREDARQAMAQVGLDAIDPDTLVGELGIGHQQMVEIARNLIDDCRVLILDEPT
AMLTAREVDLLFEQIDRLKARGVALVYISHRLEELARVAEQIAVLRDGRLVHVDAMANLT
SDEIVTWMVGRELGERIDLGVRNIGAPLLKVDRLTRGKVVREVSFEVRAGEIFGISGLIG
AGRTELMRLIYGADPKDSGTVSLAATPGAPPTPVQIASPSDAVRAGIALITEDRKGEGLL
LPQPIAANVSLGNIGSVARHGIVDAKRENALAQTQIAAMRIRTSGPGQIVGELSGGNQQK
VVIGRWLARDCRVLLFDEPTRGIDVGAKFDIYGLMGALAREGRALVVVSSDLRELMLICD
RIGVMSAGSMTGVFERDNWSQDALLAAAFAGYRSREALLHAAPDTSEAGSAS