Protein Info for BPHYT_RS09645 in Burkholderia phytofirmans PsJN

Annotation: ankyrin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 signal peptide" amino acids 1 to 53 (53 residues), see Phobius details PF12796: Ank_2" amino acids 60 to 148 (89 residues), 39 bits, see alignment E=2.5e-13 amino acids 91 to 178 (88 residues), 63.6 bits, see alignment E=5.4e-21 amino acids 181 to 237 (57 residues), 39.1 bits, see alignment E=2.3e-13 PF13637: Ank_4" amino acids 92 to 141 (50 residues), 22.9 bits, see alignment 2.2e-08 amino acids 152 to 204 (53 residues), 42 bits, see alignment E=2.2e-14 amino acids 185 to 224 (40 residues), 31.6 bits, see alignment 4.1e-11 PF00023: Ank" amino acids 121 to 150 (30 residues), 17.3 bits, see alignment 1.3e-06 amino acids 151 to 179 (29 residues), 31 bits, see alignment (E = 5.1e-11) amino acids 183 to 214 (32 residues), 35.4 bits, see alignment 2e-12 PF13606: Ank_3" amino acids 151 to 178 (28 residues), 25.9 bits, see alignment (E = 2.1e-09) amino acids 186 to 210 (25 residues), 21.2 bits, see alignment (E = 7.1e-08) PF13857: Ank_5" amino acids 180 to 224 (45 residues), 34 bits, see alignment 7.2e-12

Best Hits

KEGG orthology group: K06867, (no description) (inferred from 100% identity to bpy:Bphyt_1943)

Predicted SEED Role

"FOG: Ankyrin repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T440 at UniProt or InterPro

Protein Sequence (246 amino acids)

>BPHYT_RS09645 ankyrin (Burkholderia phytofirmans PsJN)
MREISMSFAEKQDTFTARGALASARRGAARVAFAAALACAALTSLMVSPAQAAPIDSLIK
SVKFDDVDGVNKLLAKGMDPNSVDNQGIPLLVLAAREKSDKVGAALVANPKTNIEIQDKA
GENAMMMAALNGDLDFVNLLIAKDAEVNKKGWAPLHYAAANGHDDIVKVLLDHSAYVDAG
SPNGTTPLMMAARGGHVSTVKLLLDNGADLTVKNQIGMTALDFAKTYKEPDVVEGLTARL
QQMQPK