Protein Info for BPHYT_RS09425 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1146 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details amino acids 239 to 262 (24 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 299 to 319 (21 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 354 to 371 (18 residues), see Phobius details amino acids 377 to 396 (20 residues), see Phobius details amino acids 403 to 421 (19 residues), see Phobius details amino acids 432 to 450 (19 residues), see Phobius details amino acids 462 to 480 (19 residues), see Phobius details amino acids 486 to 506 (21 residues), see Phobius details amino acids 516 to 535 (20 residues), see Phobius details amino acids 541 to 556 (16 residues), see Phobius details amino acids 563 to 584 (22 residues), see Phobius details amino acids 595 to 615 (21 residues), see Phobius details amino acids 626 to 646 (21 residues), see Phobius details amino acids 666 to 685 (20 residues), see Phobius details amino acids 696 to 717 (22 residues), see Phobius details amino acids 723 to 741 (19 residues), see Phobius details amino acids 751 to 772 (22 residues), see Phobius details amino acids 786 to 805 (20 residues), see Phobius details amino acids 817 to 836 (20 residues), see Phobius details amino acids 852 to 873 (22 residues), see Phobius details amino acids 885 to 905 (21 residues), see Phobius details amino acids 919 to 943 (25 residues), see Phobius details amino acids 950 to 971 (22 residues), see Phobius details amino acids 991 to 1009 (19 residues), see Phobius details amino acids 1021 to 1038 (18 residues), see Phobius details amino acids 1058 to 1079 (22 residues), see Phobius details amino acids 1086 to 1104 (19 residues), see Phobius details amino acids 1116 to 1135 (20 residues), see Phobius details PF10101: DUF2339" amino acids 241 to 948 (708 residues), 380.6 bits, see alignment E=9.7e-118 amino acids 959 to 1136 (178 residues), 137.8 bits, see alignment E=2.8e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1901)

Predicted SEED Role

"FIG00461478: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T402 at UniProt or InterPro

Protein Sequence (1146 amino acids)

>BPHYT_RS09425 membrane protein (Burkholderia phytofirmans PsJN)
MSVILTVLGAVVGMLTALSNDFSIGLGALLGAVAGFAFSRLLRKKSADTAAGSAATAATT
ATTATTSGSNPQGELAARVERLEREVVALRGEIRQLRAGAGEGAPDANAQTADTAAFRRS
PSDAASSPYAIPPGNERTVRPQPEVPAMPLAAARSSASAEAMVPAAASAEGATGARGATG
VSSVPVPPGMSGATQVAPTAQSLSTSASAPQPPAPPSPPAPPRGPGLAERLFKAGRDWLL
GGNTVVRVGIIVLFFGIAFLLKYAADNSLLPIEFRLAGVALAATALIVLGWRIGERRGAY
GLVLQGGGVGALYLTVFAATRLYHLLPAGAALPLMVAICALSAFLAVRQNASSLAFIGSA
GGFLAPILLSTGGGSHVVLFSYYALLNAGIFAIAWFKAWRPLNLLGFVFTFSIDAAWGAT
AYRPELLASTEPFLILFFLMYVGIALLYAVRREIALKHYVDGTLVFGTPLVAIGLQAALM
KNTEFGLAWSAVALAAFYLAIAGWLARRRERLGMMFEAMLALAVIFATLAVPLAFTGPTT
SATWAIEGAAISWLAVRQRRLSAFGFGLLLQLAAAGAYAVGTIAQTHDANVWPVLNGAYI
ASVLIALAGVFTGWRLHGRSEAGEWHLWMPQIGLVASVWGLLWWTLGGLYEIHAYTSAHP
GVEHARFDTAAVALFAVLTAWLAHGARRTLRWPLAEWPALALVPVLALLTAQLFTLGMAP
VSGYGWLVGALAAFSAYGLLWRQQRDVSDIVLAPLHTLMFWTAGALAALEGYWGLRAYVP
EGAWSWSAWAYGFGVLLLLLAGAGHRLRWPVARFMRAYQVWAAAPLAVLLWAWSIASVTS
DGSAAPLMWLPILNPLDVAQILAVVACAVWLHRLRALGVQWHPRAFDYLVLATLFLWFNA
LLLRTLHHHFHAAYDVGAVLASFGLQQVFLVGWSAFAFAGLWLARRDSIVRLCAIASTPL
VLVMWIWTFFANLTQDGGAWARLPLLNPLDLVQAVVFALAAFWLVRIHWLGVPIGEYRMP
LQVAAGATGFVWLNAMLLRTLHHWTGVPYAFETMSHSMLVQASISVFWTVCALAMMIWAT
RRASRMVWFIGGALLAATVVKLFLFDLSHMTGIERIVSFIGIGLMLLLIGYFSPLPPKSL
VVESKQ