Protein Info for BPHYT_RS08235 in Burkholderia phytofirmans PsJN

Annotation: nucleoprotein, Hfg, host factor I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 TIGR02383: RNA chaperone Hfq" amino acids 9 to 65 (57 residues), 68.2 bits, see alignment E=2.1e-23 PF17209: Hfq" amino acids 9 to 65 (57 residues), 67.4 bits, see alignment E=3.5e-23

Best Hits

KEGG orthology group: K03666, host factor-I protein (inferred from 100% identity to bpy:Bphyt_1665)

Predicted SEED Role

"RNA-binding protein Hfq / domain of unknown function" in subsystem Hfl operon or Polyadenylation bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T3B4 at UniProt or InterPro

Protein Sequence (172 amino acids)

>BPHYT_RS08235 nucleoprotein, Hfg, host factor I (Burkholderia phytofirmans PsJN)
MASAESHPQNDFMNAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRA
ISTIQLDTGTRPAPRAGRPSHGEHTTRGPHGSREPRDHREPREPREPRESYGAPSSDRPA
SDRSGGTSDGPVVVTRRRRLFGTGGDGGNHGGGNRGGDNHGGGNHGGNGGSE