Protein Info for BPHYT_RS07980 in Burkholderia phytofirmans PsJN

Annotation: exodeoxyribonuclease V subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 695 PF13245: AAA_19" amino acids 175 to 320 (146 residues), 116.8 bits, see alignment E=3.3e-37 PF13604: AAA_30" amino acids 177 to 333 (157 residues), 91.7 bits, see alignment E=2e-29 PF00580: UvrD-helicase" amino acids 178 to 241 (64 residues), 28.8 bits, see alignment E=4e-10 PF05127: Helicase_RecD" amino acids 190 to 300 (111 residues), 28.4 bits, see alignment E=5.8e-10 PF01443: Viral_helicase1" amino acids 616 to 663 (48 residues), 22.6 bits, see alignment 3.4e-08 PF13538: UvrD_C_2" amino acids 616 to 661 (46 residues), 47.3 bits, see alignment 5.9e-16

Best Hits

KEGG orthology group: K03581, exodeoxyribonuclease V alpha subunit [EC: 3.1.11.5] (inferred from 100% identity to bpy:Bphyt_1615)

Predicted SEED Role

"Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T361 at UniProt or InterPro

Protein Sequence (695 amino acids)

>BPHYT_RS07980 exodeoxyribonuclease V subunit alpha (Burkholderia phytofirmans PsJN)
MSTFEQSASAPPELDDIGVSLPAPADFSIALAEGFARRIGALARRGGASAEAVKWAARSA
FAASRATAEGHVCVPLAILARRFEASSAEVRTALFASGMASDGSQSSAALRPLVVDGQGR
LYLARYYDYERRLARALVAHARADEGVERLANAQTLHERLLRYFGPPKDNEVDWQRVAAV
MALSGQLTIVSGGPGTGKTTTVVGVLACLLDARTDLRIALAAPTGKAAQRMQEALLARAG
DLPPELAARLPQTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAMAAHLLD
AIAPQTRLVMLGDKDQLAAVEAGAVFAELSARPTFTQGGLQRIADALGIDEKQLTQALPG
ASRGLGEEPTDFSAQSYVPNDDLFAYADSPGGFDEPPGGDLFESAAPPPSHIATASPMQN
PLADCVVWLERNYRFGLESPIGRLSLAIRNGSASAALDVLRTDPTETCAAALYEDTHATL
TERTVARLAAGFAPYADALATALAAEAPDPLPLFDALNRFRILCATRSGPRGVDQVNAAM
AAQVRRAAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGANGALRVYFRTGDG
GLRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLMLPSVFSRVLSRELVYTAITRARERV
EVIGARAVLAQAIATPTQRDSGLAARIAEVWRGVE