Protein Info for BPHYT_RS07970 in Burkholderia phytofirmans PsJN

Annotation: exodeoxyribonuclease V subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1124 PF04257: Exonuc_V_gamma" amino acids 2 to 344 (343 residues), 266 bits, see alignment E=4.6e-83 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 2 to 1070 (1069 residues), 691.8 bits, see alignment E=9.1e-212 PF17946: RecC_C" amino acids 817 to 1064 (248 residues), 137 bits, see alignment E=7.8e-44

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 100% identity to bpy:Bphyt_1613)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T359 at UniProt or InterPro

Protein Sequence (1124 amino acids)

>BPHYT_RS07970 exodeoxyribonuclease V subunit gamma (Burkholderia phytofirmans PsJN)
MLQLFYSNRYETLVGALLDDLAQAPSDPWTAQPVIVPSAAVRRRLELDIAARQGICANVN
FGYLAQWLWAQIGGVIEVPKHSPFAPDRLVWRCYRLLSDADEALPWNASPRLRTYLDAAD
ASMRYELARRVATVLDHYLTYRPEWLLQWQKGGSIFASGAADDTGPRLAGASEAAREDER
WQAALWRAVLTELSGDAQTPAAALPPAYRFLDEIGTLDLEAISNAQWPEAVSVFALPTMP
PLHVALLRALSRWVDVRLYVMNPCREFWFDVVSAGRVEALDAAGQLDYQEVGHPLLAEWG
RQTQAQLHMLHELTESAASGEVGDFTENPEPSWLAAVQNGILNLQDEIEADELPIESGIE
VHVCHSLSRQLEVLHDRLLGWFDEFDDLQPSDVLVAVSDLAAAGPLIDAVFGTTPPGDTR
RIPYRITGLPPSQANPVARLLLDWLALPERSVGAPDLIEWLRVDAIAVRYGIDASSLEAA
QEWLATAGARRGLAPVEPAGEHVPIARHTFADALTRLYLGYAMPDGGEPVDAWLPVEGAD
GSDAELLGRLSRFVDDIDSFAANCAIERTPSEWTQLLLETLAQCFDGGVEFADSLAAVRD
AIDKMGDAMQAGAQEVAMPAAVVRGALTEALDDPARGGVPWGSVTFSSLTSLRGLPYRVV
CLLGMDDGVLPSLARADEFDLMAAFGKAGDRQRRDDERNLFLDLLLAARDRLFIAYTGRS
IRDNAPLPPAALVDELLDYLAQASAGEGASPAEVERARHAFIVDHPLQAFASDYFSSQSG
LFSYDADRAELATLLASPTHAAAAPFFDQPLPPEEPAPIAFDEFVRFWRHPARALLRDRL
GIVLSDAQGELLDTEPFDLDYAGRDALADRLLPVLLDVDTDDDVVFERVRRVAAASPELP
GGATGAVWRARELGALRQLADSVRREVASGVERLPFVLDIAPRWPESEELAGALFGPHDA
LLRQAAETPLQLHGSLNLLTETGQVIFRYAKPTARDYLSAWLAHLVYCAARPDGPRRTVW
HGSGESFELAPVAAPLDELAPLAALFRAGRMLPLRFFPKSAWTKVSESDSAAQGVWINDR
VRGESDDPALRIALRGTPLTIDEPFGSLAAIVFKPLLQHLRSAS