Protein Info for BPHYT_RS07780 in Burkholderia phytofirmans PsJN

Annotation: nodulation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1107 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 337 to 353 (17 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 388 to 410 (23 residues), see Phobius details amino acids 431 to 454 (24 residues), see Phobius details amino acids 463 to 483 (21 residues), see Phobius details amino acids 525 to 548 (24 residues), see Phobius details amino acids 933 to 951 (19 residues), see Phobius details amino acids 958 to 978 (21 residues), see Phobius details amino acids 984 to 1009 (26 residues), see Phobius details amino acids 1030 to 1049 (20 residues), see Phobius details amino acids 1061 to 1087 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 776 (772 residues), 806 bits, see alignment E=4.8e-246 amino acids 847 to 1087 (241 residues), 278.5 bits, see alignment E=1e-86 PF02355: SecD_SecF" amino acids 337 to 481 (145 residues), 22.2 bits, see alignment E=8.5e-09

Best Hits

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 81% identity to bac:BamMC406_1078)

Predicted SEED Role

"Acriflavin resistance plasma membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T327 at UniProt or InterPro

Protein Sequence (1107 amino acids)

>BPHYT_RS07780 nodulation protein (Burkholderia phytofirmans PsJN)
MNLSRPFISRPVATTLLAIGIALAGIFAFTKLPVAPLPQVDFPTISVQASLPGASPNTVA
TSVASPLERHLGSIADVTEMTSQSSVGSTRITMQFGLNRDIDGAARDVQAAINAARADLP
ASLRSNPTYHKVNPADAPILILALTSKTLTAGQLYDSAATVLQQSLSQVDGVGEVDVSGS
ANPAVRVELEPNALSHYGIGLEDVRAALAAANANSPKGSIEFGPNRVQIYTNDQASKASQ
YKDLVIAYRNGSAVKLSDVAEVVDSVEDLRNLGLFNGKRSVLVILYRQPGANIIDTIDRV
TAMLPQLHASLPADVDIAPAADRSTTIRASLKDTERTLVVAVALVVMVVFLFLRNWRATL
IPSVAVPISIIGTFGAMYLLGFSIDNLSLMALTIATGFVVDDAIVVLENISRHIENGVPR
MKAAFLGAREVGFTVLSISISLVAVFLPILLMGGIVGRLFREFALTLSLAIGVSLIVSLT
LTPMMCSRLLREPHEQKEEGRFGRWLERGFASMQRGYERTLGWALLHPRLIVTILLLTIG
LNVWLYIIVPKGFFPQQDTGRLVGGIQADQATSFQSMKGKFAQMMEIVGKNPAVESVAGF
TGGRQTNSGFMFVTLKSKSERKASADQVIQQLRAPLGDVAGARTFLQAVQDIRVGGRQSN
AQYQFTLLADSTPDLYLWGPKLTEALQARPELADVNSDQQQGGLEAMVTIDRATAARLGI
KPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKYWQSPDMLKQIYISTSGGSASGA
QTTNAPAGTVTKAAAATATATSTSATTGGTAGTTASSAASIAADSARNQAINSIAASGKS
SASSGAAVSTAKETMVPLSAIASFGPGSTPLSVNHQSQFVASTISFNLPPGVSLSTATQA
IYDTMAQIGMPGTIHGSFQGTAQAFQQSMSDQPILILAALAAVYIVLGMLYESYIHPLTI
LSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKKNAIMMVDFAIEASRQGLSSRD
AIHQACLLRFRPIMMTTFAALLGALPLAFGRGEGAELRAPLGIAIVGGLIVSQMLTLYTT
PVVYLYMDRIRVRWEARKGRRAGAAAT