Protein Info for BPHYT_RS07365 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1327 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details PF13429: TPR_15" amino acids 531 to 812 (282 residues), 311.7 bits, see alignment E=2.4e-97

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1492)

Predicted SEED Role

"Extracellular Matrix protein PelB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T2U5 at UniProt or InterPro

Protein Sequence (1327 amino acids)

>BPHYT_RS07365 hypothetical protein (Burkholderia phytofirmans PsJN)
MVDNRPRIAPTWLVLLLAGVVLITLYLVHPRGGLRSRMTSTDAPSDLSIAYLEAWLRVQP
DNSEILSVLGTQYVRLGRNEDARRIAARMEAMPDEHLRRAAQLLRLSVDTRETFALPAND
PGREAALDRLRTQLTNAAALTWSNADLQMLAEAAASVNAQQLAGQLYARLAVQDPAQQTR
WNREVVRFAMYGGDYRGAANGWFRLQASAATVDARRQCFIEGIKALQSGNLLDEALAAAD
QHGAEFRHDHETLVVLLNLARAAHRPDLVDRYAKALAGYAQAQPEEDGALRLVDFIRERA
SEAGTQGQYAYMDGPQVRPGLAVRASTHGSREVHVVRVAASSAAPASVKPAAAAPAATAS
AAAAAPAAAAANDVPGLLYQSFLESSDLPNAQRVAAEQVSKNPGSPVWTKRLAQVAEWNH
ASPLALQMWLAYAQATHDPEGWKNVMRLAPMLNDDNAYLAALIQASNASPGDLKLVDSVV
AAYERLGRPDDALAFLRGRQRNSPAEAIDARLGQLAERSGHDDEALSYYRKLNQLYPSNT
QYALRTASLLYRHGDYKGALDTLLAARRGAKDDDVLFWRNAAQLARLLQRDDIANDAYKH
LLASGQAAPEDLSAMTYFYDAYPIDAARTSELQFRRDHSQRALQSAIHYYTDAEQYDRVD
ELLKSLTPEQLAAGEADPAFLRVRAEYYRQIDRPLDALRDLQHAVSLPGATLDLRAALLW
TLVDYGSEAQLREAVAEWRDAPAQAPALWGPLAAAQMRLNRPEAALKYLRLQSASMSRDP
LWQLAYAEAQEMAGRSDLAWSIRRNVWRQMQQEEAEIRANSAQGQIVLRTRASQGGEVRE
QMLGRRVTLASIFENADVSKAFLIDLLASDAGRNDNADARRTLLGDAAGLPPAQPVKAPA
AAKSPDQALLSSSVARDVALAWAMSHEASPLAKRWLARQYANVLVQPSEQLIAIALAEND
KPAMERLLDQQGARLPLYNRIDASIAVDRPGAAENLAFQGLEGAPYDSELHSRLEQTALT
WPQSLDATVTSFVEHPLDYVEQTLAGSIKVADLYMIGVNGVQRFQHSTDESQLTNVPSVD
RSVEFYARRQTYDTAFMVTAGRREALDSFYSVSVGAEWGRNSPLSIALKAGRNQTARESQ
ALLVGGMKDNVVGTITYRATQHLYATGTVEADRFYSQARNYLGSGVLSTGEIGYRIRTNY
PDYTVRLIGAHGDYGASGSADGLISRLIPASAGPADASTFVPQTYSQYGLFFGFGNDLID
QYTRAWRPFLDVGVLHDSFQGWGPSISLGLAGTVFGGDHAALFFSHQRVSRLGTPVTQIG
ARYSWFY