Protein Info for BPHYT_RS07360 in Burkholderia phytofirmans PsJN

Annotation: sugar ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 937 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1491)

Predicted SEED Role

"Extracellular Matrix protein PelA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T2U4 at UniProt or InterPro

Protein Sequence (937 amino acids)

>BPHYT_RS07360 sugar ABC transporter (Burkholderia phytofirmans PsJN)
MKKRTRACAGGDSCGVVERAGERFLTRTLIAVVLGAAGIAPLAAHAATHAATQATTQAEA
APSQSAAVAAHSAVSEPNLAFFYAANPPVGELQAFDAVVVDPATGFDPAAHPLAHTTWIA
RTSGAESAGSADVFLSGQIEPLWQRGYRGFLLDTPAAVAAASRIHQAHPDARLVAGGADV
MRNALPVAKSLYAVVGDSLVRGIDDSGQLLDVPEALRAQRVADARAFTQQSGVPVVSVEY
CARNDRQCARDTAARVVSTGMLPYVTSKARDVVGIGKIEVLPRKILVVQDRDTKDPLDLS
AGVRDLATPLNYMGYDVEYADFSSRLPDGITPDRYAGVVAWIQRGAVPDPEAWQRWIAAR
MADHVPVAFLGAFGFDAAGSAGAALDLQAVGGTLAAPVTVVKSDPMVGFEISPKPEPRDL
QGVRVGSRSQSLLRVSANGVLLDQVALTPWGGYALSPYTVTSLDSIEQERWAIQPMAFMK
AALHLQDMPSPSVTTENGRRLFMSHVDGDGFASRAEFPGPDYSGEALYEQIFTRYQVPMT
LSVIEGEVGPKGLHPDISPRLEEIARKMFALPHVEIGTHTYSHPFQWEQVDSKTGAQVDR
GGGDAAFSLNIPGYHFNIDREITGSIDYINTRLAPPGKKTVLLQWSGDCRPPGFVVRKVY
EAGVYNFNGGDTVITRSANSWTNIAPIGVDKGPGAYQVYAPNQDENVYTNDWQGPFYGFQ
RVLETFSMTDKPLRFKPIDIYYHMYSGTKVASLRALDQIFSAVLKQPVMPVYVSEYIRKV
LDWHTFAVAKEVGPQANDWLVRGNGEVRELHWPQAARPSLADASGVTGFSNGPDGTYIHI
DGGSARFAIGNATDAAPYIGEANGFVRNFQRTAQGVRFEFAGHYQPFVKLANAQQCKVSV
NKQPVATRRDGEFLRFDTPADVGHKLNYQSIEVACGR