Protein Info for BPHYT_RS06500 in Burkholderia phytofirmans PsJN

Annotation: LOG family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 TIGR00730: TIGR00730 family protein" amino acids 2 to 179 (178 residues), 219 bits, see alignment E=2e-69 PF18306: LDcluster4" amino acids 9 to 118 (110 residues), 49.8 bits, see alignment E=2.9e-17 PF03641: Lysine_decarbox" amino acids 46 to 174 (129 residues), 148.1 bits, see alignment E=1.8e-47

Best Hits

Swiss-Prot: 56% identical to LOGH_PSEAE: Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase (PA4923) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K06966, (no description) (inferred from 100% identity to bpy:Bphyt_1319)

Predicted SEED Role

"Lysine decarboxylase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T2C3 at UniProt or InterPro

Protein Sequence (194 amino acids)

>BPHYT_RS06500 LOG family protein (Burkholderia phytofirmans PsJN)
MKSVCVYCGSSNGAKPLYAEAARTFGRALVQADLALVYGGGKVGLMGVIADTVMAEGGRA
IGVIPELLVNKEVGHNGLTELHVVPDMHHRKKMMADLSDAFVAMPGGAGTLEELFEVYTW
AQLGYHQKAVALLNIDGFYDPLINMLQHTVDEGFMRQTYFDILQIDADPAGLIGKLQRYQ
PPVSDKWAIKRDAV