Protein Info for BPHYT_RS06220 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 77 to 94 (18 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 131 to 148 (18 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1263)

Predicted SEED Role

"FIG00455164: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T267 at UniProt or InterPro

Protein Sequence (469 amino acids)

>BPHYT_RS06220 membrane protein (Burkholderia phytofirmans PsJN)
MVRLVMILLGVDYLRTRWLSLRIVGCISFLLGVFVFIDALDSALYFPITPFVSLLLLEGL
ATLAVAWTGMGGQRTLRYVKGIAFTTAAALILIGHEHGNFILSMIFGTLFFADGLLQIVA
AKVVRFRTWRLAMIGGAVEIALAIFFYQPYPTHYVGTVPYCVGLGLIFGGWNMILLSARV
RRLASNPAVAAGDSAADAGIAAASALAASRVIAHEWDGPPAADEAALTVHVWTPVGSAKG
EARRQLIVDRYIAAVDRNGVISTGHAALESPEGVYISLYPGVEIDRSPDDFARLLRATRE
NDVPGLFQPDYPTESKAWCPSTVQVRIRNYDPVRLARFWDTYRKDTTYNLTHRNCSSSVS
RALEAAIEGASARVWGNLGGWQPFLRVISTPELWVAAQVRKRAATMAWTPGLTLDYARAL
SMLADPRPSGWVKMARLAVRRMVRSRQQWRKEARHAHVADDAARATVRE