Protein Info for BPHYT_RS06085 in Burkholderia phytofirmans PsJN

Annotation: ferredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 TIGR01944: electron transport complex, RnfABCDGE type, B subunit" amino acids 5 to 162 (158 residues), 213.1 bits, see alignment E=1.3e-67 PF04060: FeS" amino acids 17 to 49 (33 residues), 51.5 bits, see alignment 2.2e-17 PF14697: Fer4_21" amino acids 82 to 136 (55 residues), 64.5 bits, see alignment E=2.6e-21 PF00037: Fer4" amino acids 83 to 104 (22 residues), 29.9 bits, see alignment (E = 1.2e-10) PF13237: Fer4_10" amino acids 83 to 130 (48 residues), 29.1 bits, see alignment 2.8e-10

Best Hits

KEGG orthology group: K03616, electron transport complex protein RnfB (inferred from 100% identity to bpy:Bphyt_1236)

Predicted SEED Role

"Iron-sulfur cluster-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T240 at UniProt or InterPro

Protein Sequence (279 amino acids)

>BPHYT_RS06085 ferredoxin (Burkholderia phytofirmans PsJN)
MTVTDTRTLADRIEDLLPQTQCTKCGYPACRPYAEAVASGEANYNQCPPGGAEGVARLAA
LLGKPVIPLNSANGVERPRPLAVIDEQVCIGCTLCMQACPVDAIVGAPKQMHTVIVELCT
GCDLCVPPCPVDCIALPPVTGEATGWDAWSQAQADAARARHDRREARLAREREAAEARAA
ARRAGSAATAQVTETTAHTDAAPSAAPAADDAEAKKRAIIQAALERARKKKEELAAKGQG
PLNTERVSADVQAQIDAAEARRRRLGLAADDTGTPSDKR