Protein Info for BPHYT_RS05655 in Burkholderia phytofirmans PsJN

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 transmembrane" amino acids 25 to 44 (20 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details PF06912: DUF1275" amino acids 24 to 236 (213 residues), 136.3 bits, see alignment E=5.7e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1151)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1V6 at UniProt or InterPro

Protein Sequence (248 amino acids)

>BPHYT_RS05655 membrane protein (Burkholderia phytofirmans PsJN)
MPINYLRGFTAPERTDVTNRRLGRSLAFVAGAANAGGFLAVGQYTSHMSGIVSSLADNAV
LGEAGLFVSGLSSLFSFLVGAAASAILINWGRRRNLHSIYATPLAIEAILLLCFGLLGSN
LEHHRFLFVPATVCVLCFVMGLQNAMITKISRSEIRTTHVTGLVTDVGIELGKMLYWNSP
SIAGEGAVRADKQKLALLGSLLLSFIAGGVAGAVGFKYLGFIASVPLAIVLLTLAVVPLV
DDVRGVRC