Protein Info for BPHYT_RS05465 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 699 transmembrane" amino acids 68 to 86 (19 residues), see Phobius details amino acids 98 to 130 (33 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 168 to 190 (23 residues), see Phobius details amino acids 410 to 438 (29 residues), see Phobius details amino acids 446 to 478 (33 residues), see Phobius details amino acids 486 to 508 (23 residues), see Phobius details amino acids 516 to 538 (23 residues), see Phobius details PF04632: FUSC" amino acids 396 to 686 (291 residues), 38.4 bits, see alignment E=9.5e-14 PF13515: FUSC_2" amino acids 409 to 532 (124 residues), 80.4 bits, see alignment E=1.9e-26 PF11744: ALMT" amino acids 421 to 539 (119 residues), 22.8 bits, see alignment E=6.1e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_1114)

Predicted SEED Role

"FIG028593: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1H3 at UniProt or InterPro

Protein Sequence (699 amino acids)

>BPHYT_RS05465 hypothetical protein (Burkholderia phytofirmans PsJN)
MLNRKSNPSSSSQRWSNWLYAVVSAIYRKRPVWMVSFSTSEASLSEGLRAACASTAMLAL
GNLLHEPTFAWAAIGAFWTCLADAGGSNRARFASMMGFAVLSTLCGGLTAYASGAGAVFA
ALAVLVFTTIGAFGRIWGAATSQVTILAATACVVMVDRPMHSVRQGMAFLGIYLVGCLFA
VALSLTVWRIHPFGTSRSSLRAVYLRLADIAVDSARLLERRAARGEWATHAAKFRADARA
ALERSRKVLARVPASRTGGRETYDTLLGLLTDSEALFAYLIAVSGACERVPDDAWRAQRA
ARLLTVMGDVLRGIGAAANDAQWARLADLQLRLRRFARRLETALMEPVTLKSDFELVDFT
PVHAEPEGWRDNAARLFTRVWSTFKANLSVESVGLRHAARVGVTTTTGFLVIRALGLPFG
YWATMATLLILQPSIAATWPRSIERAAGSIVGGVLAAAIGYAIHSPLGISLAVFPLVMAT
MALRPVSYSLFVLFLTPTFVLVADFATPGASEFAYALTRLGNNVLGCVLALLATFYLWPT
REKIDYRAYLSEAVRANLAYLKAAMESPRRSEKEMERLRRAAGLGSNNAEEAIGRMRLEK
LEDSMVDTVTLTVLSLLRRMAGTATQLRLSMNRRDMHDELGTWIATVSADIDAALSRTLR
PVRLGLPAREGLTSLEADAVGELALMHRLLNERMREARG