Protein Info for BPHYT_RS03820 in Burkholderia phytofirmans PsJN

Annotation: major facilitator superfamily protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details amino acids 128 to 149 (22 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 234 to 255 (22 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 331 to 351 (21 residues), see Phobius details amino acids 357 to 376 (20 residues), see Phobius details PF07690: MFS_1" amino acids 8 to 339 (332 residues), 147.1 bits, see alignment E=6.4e-47 PF00083: Sugar_tr" amino acids 40 to 174 (135 residues), 29.9 bits, see alignment E=2.9e-11

Best Hits

Swiss-Prot: 40% identical to YTBD_BACSU: Uncharacterized MFS-type transporter YtbD (ytbD) from Bacillus subtilis (strain 168)

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 100% identity to bpy:Bphyt_0784)

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0A2 at UniProt or InterPro

Protein Sequence (388 amino acids)

>BPHYT_RS03820 major facilitator superfamily protein (Burkholderia phytofirmans PsJN)
MPLPLLALAVAAFGIGTTEFVIMGLLPDVARDLSVSIPAAGMLVSAYALGVTIGAPIVAI
AVANMPRKKALMSLIGVFIVGNLLCAVAPGYAVLMAARIVTAFCHGAFFGIGSVVAAGLV
APNRRAQAIALMFTGLTLANVLGVPLGTALGQAVGWRATFWAVTGIGVVAAAALAVCLPA
KIEMQKASLVREFSVLKNPQVLMVLGISVLASASLFSTFTYITPILEDVTGFTPHAVTLV
LLLFGLGLTVGSTLGGKLADWRLMPSLVAFLLAIVVILTIFAGTMHAEIPAMITIFVWGI
LAFAIVPPLQMLIVDRASHAPNLASTLNQGAFNLGNATGAWLGGMAIGAGAPLTTLPWVG
VATSIGALVLTLWSVSIDRRAQRMAMVG